| Owczarzy R, Moreira BG, You Y, Behlke MA, Walder JA (2008) Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Biochemistry, 47: 5336-5353. |
| This is a copy of the table from the publication. When you click on the specific melting temperature, you will obtain average melting profile (fraction of melted bases pairs versus temperature). |
| DNA sequence (5′ to 3′) | Tm (oC) at [Mg2+] indicateda | ||||||||
| 0.5mMb | 1.5mMb | 3.0mMb | 10mMb | 20mMb | 50mMc | 125mMc | 300mMc | 600mMc | |
| aCt = 2 ± 0.2 µM. Buffers do not contain any KCl. b2mM Tris-HCl buffers. c10mM Tris-HCl buffers. | |||||||||
| TTGTAGTCAT | 27.2 | 30.9 | 32.3 | 34.9 | 36.0 | 37.3 | 37.5 | 37.1 | 35.4 |
| ATCGTCTGGA | 35.1 | 38.9 | 40.6 | 43.4 | 43.4 | 43.7 | 44.4 | 43.0 | 41.6 |
| GATGCGCTCG | 44.0 | 47.7 | 48.8 | 50.7 | 51.2 | 51.6 | 51.9 | 49.9 | 47.7 |
| GGGACCGCCT | 48.3 | 51.9 | 53.7 | 55.5 | 55.9 | 55.4 | 56.1 | 54.9 | 52.2 |
| CGTACACATGC | 40.2 | 44.2 | 45.7 | 48.1 | 48.0 | 48.1 | 48.6 | 47.0 | 44.9 |
| CCATTGCTACC | 38.9 | 42.7 | 44.2 | 46.3 | 46.9 | 47.2 | 47.5 | 47.0 | 44.8 |
| TTCTACCTATGTGAT | 43.3 | 46.1 | 47.8 | 50.2 | 50.4 | 51.0 | 51.5 | 50.7 | 49.4 |
| GCAGTGGATGTGAGA | 52.3 | 55.1 | 56.5 | 58.1 | 58.7 | 59.2 | 59.0 | 58.2 | 56.1 |
| CAGCCTCGTCGCAGC | 61.9 | 64.1 | 65.3 | 66.8 | 67.3 | 67.5 | 67.3 | 65.5 | 63.7 |
| TGATTCTACCTATGTGATTT | 51.8 | 54.6 | 55.8 | 57.7 | 58.2 | 59.3 | 59.5 | 58.8 | 57.7 |
| AGCTGCAGTGGATGTGAGAA | 61.1 | 63.7 | 64.8 | 66.3 | 66.8 | 67.7 | 67.3 | 66.3 | 64.7 |
| CAGCCTCGTTCGCACAGCCC | 68.9 | 71.3 | 72.3 | 73.4 | 73.9 | 74.2 | 73.9 | 72.3 | 70.3 |
| GTTCTATACTCTTGAAGTTGATTAC | 57.2 | 59.7 | 60.8 | 62.4 | 63.0 | 63.8 | 64.0 | 63.5 | 62.6 |
| CTGGTCTGGATCTGAGAACTTCAGG | 65.6 | 67.7 | 68.7 | 69.8 | 70.3 | 70.7 | 70.6 | 69.8 | 68.6 |
| CAGTGGGCTCCTGGGCGTGCTGGTC | 73.5 | 75.3 | 76.2 | 77.3 | 77.6 | 78.2 | 77.4 | 75.9 | 74.0 |
| CTTAAGATATGAGAACTTCAACTAATGTGT | 61.0 | 63.1 | 64.1 | 65.5 | 66.0 | 67.1 | 67.1 | 66.2 | 65.2 |
| AGTCTGGTCTGGATCTGAGAACTTCAGGCT | 69.8 | 71.6 | 72.5 | 73.6 | 73.9 | 74.2 | 74.4 | 73.5 | 72.2 |
| GACCTGACGTGGACCGCTCCTGGGCGTGGT | 76.1 | 77.8 | 78.6 | 79.4 | 79.7 | 80.0 | 79.8 | 78.1 | 76.4 |